PUBLICATIONS

2023
23.  Rubenstein LD, Woodruff KA, Taylor AM, Olesen JB, Smaldino PJ, Rubenstein EM. "Important enough to show the world": Using                       Authentic Research Opportunities and Micropublications to Build Students' Science Identities. bioRxiv [Preprint]. 2023 Aug                               22:2023.08.17.553701. doi: 10.1101/2023.08.17.553701. PMID: 37662264; PMCID: PMC10473625.                                                                   "Important enough to show the world": Using Authentic Research Opportunities and Micropublications to Build Students' Science             Identities.

22.  Turk SM, Indovina CJ, Miller JM, Overton DL, Runnebohm AM, Orchard CJ, Tragesser-Tiña ME, Gosser SK, Doss EM, Richards KA, 
       Irelan CB, Daraghmi MM, Bailey CG, Niekamp JM, Claypool KP, Engle SM, Buchanan BW, Woodruff KA, Olesen JB, Smaldino PJ,
       Rubenstein EM. Lipid biosynthesis perturbation impairs endoplasmic reticulum-associated degradation. J Biol Chem. 2023 Jun
       17;299(8):104939. doi: 10.1016/j.jbc.2023.104939. Epub ahead of print. PMID: 37331602. 
        Lipid biosynthesis perturbation impairs endoplasmic reticulum–associated degradation - ScienceDirect

21.  Daraghmi MM, Miller JM, Bailey CG, Doss EM, Kalinski AL, Smaldino PJ, Rubenstein EM. Macro-ER-phagy receptors Atg39p and                   Atg40p confer resistance to aminoglycoside hygromycin B in S. cerevisiae. MicroPubl Biol. 2023 Jan       
       31;2023:10.17912/micropub.biology.000738. doi: 10.17912/micropub.biology.000738. PMID: 36818312; PMCID: PMC9932795.
       Macro-ER-phagy receptors Atg39p and Atg40p confer resistance to aminoglycoside hygromycin B in S. cerevisiae - PMC (nih.gov)

2022
20.   Doss EM, Tragesser-Tiña ME, Huang Y, Smaldino PJ, True JD, Kalinski AL, Rubenstein EM. APC/C Cdh1p and Slx5p/Slx8p ubiquitin                ligases confer resistance to aminoglycoside hygromycin B in Saccharomyces cerevisiae. MicroPubl Biol. 2022 Mar 24;2022:10.17912/              micropub.biology.000547. doi: 10.17912/micropub.biology.000547. PMID: 35622489; PMCID: PMC9007615.
        https://pubmed.ncbi.nlm.nih.gov/35622489/

2021
19.  Yi-Ju Tseng, Siara N Sandwith, Katelyn M Green, Antonio E Chambers, Amy Krans, Heather M Raimer, Meredith E Sharlow, Michael A           Reisinger, Adam E Richardson, Eric D Routh, Melissa A Smaldino, Yuh-Hwa Wang, James P Vaughn, Peter K Todd, Philip J Smaldino.             The RNA helicase DHX36-G4R1 modulates C9orf72 GGGGCC hexanucleotide repeat-associated translation. J Biol Chem. 2021                     Aug;297(2):100914.  doi: 10.1016/j.jbc.2021.100914. Epub 2021 Jun 24. PMID: 34174288.
       https://doi.org/10.1016/j.jbc.2021.100914



18.  Woodruff, KA; Richards, KA; Evans, MD; Scott, AR; Voas, BM; Irelan, CB; et al.; Rubenstein, EM (2021). Inner Nuclear Membrane Asi               Ubiquitin Ligase Catalytic Subunits Asi1p and Asi3p, but not Asi2p, confer resistance to aminoglycoside hygromycin B in Saccharomyces         cerevisiae. microPublication Biology.
       10.17912/micropub.biology.000403.



2020
17.  Runnebohm AM, Evans MD, Richardson AE, Turk SM, Olesen JB, Smaldino PJ, Rubenstein EM. Loss of protein quality control gene               UBR1 sensitizes Saccharomyces cerevisiae to the aminoglycoside hygromycin B. Fine Focus. 2020 Oct 26;6(1):76-83. doi:                               10.33043/FF.6.1.76-83. PMID: 33554225.
       https://doi.org/10.33043/FF.6.1.76-83​



16.  Sandwith, S.N.µ, Saunders, D.W.µ, Reisinger, M.A.µ, Schmidt, E.S.µ, Richardson, A.E.µ, Chambers, A.E.µ, Smaldino, M.A., Smaldino,           P.J. Multi-view Protocols: visualizing the macro- and micro- dimensions of a laboratory method. The American Biology Teacher (2020) 82         (9): 624-627.
       https://doi.org/10.1525/abt.2020.82.9.624



15.  Adam. E. Richardson, Zachary. A. Zentz, Antonio E. Chambers, Siara N. Sandwith, Michael A. Reisinger, Destinee W. Saunders, Joshua           D. Tompkins, Arthur D. Riggs, Eric D. Routh, Eric M. Rubenstein, Melissa A. Smaldino, James P. Vaughn, Robert A. Haney, and Philip J.             Smaldino. G-Quadruplex Helicase DHX36/G4R1 Engages Nuclear Lamina Proteins in Quiescent Breast Cancer Cells. ACS Omega 2020         5 (38), 24916-24926.
       https://doi.org/10.1021/acsomega.0c03723



2019
14.  Niekamp, JM; Evans, MD; Scott, AR; Smaldino, PJ; Rubenstein, EM (2019). TOM1 confers resistance to the aminoglycoside hygromycin           B in Saccharomyces cerevisiae. microPublication Biology.
       10.17912/micropub.biology.000193



2018
13.  Chambers, A.E.*,µ, Richardson, A.E.* ,µ , Read, D.F.*, Waller, T.J.*, Bernstein, D.A., Smaldino, P.J. An In Vitro Assay to Detect tRNA-               Isopentenyl Transferase Activity (2018) J. Vis. Exp., Oct 8;(140).
       https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6235434/



12.  McComb C., Otto, G. Garvey J. µ, Omans, D. µ, Smaldino, P.J. (2018) “Visualizing Cancer: A Transdisciplinary Art & Biology                               Collaborative”. Journal of Teaching and Learning 11 (2), 1-10.
       https://doi.org/10.22329/jtl.v11i2.4932



2017
11.  *Read D.F.µ, *Waller T.J.µ, Tse E, Southworth D.R., Engelke D.R.C , Smaldino P.J. (2017) “Aggregation of Mod5 is affected by tRNA                 binding with implications for tRNA gene-mediated silencing” FEBS Lett. Jun;591(11):1601-1610. doi: 10.1002/1873-3468.12627.
       https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5468478/



10.  *Waller, T.J.µ, *Read, D.F.µ, Engelke, D.R. C, Smaldino P.J. (2017) “The human tRNA-modifying protein, TRIT1, forms amyloid fibers in             vitro” Gene. 612:19-24. doi: 10.1016/j.gene.2016.10.041.
       https://doi.org/10.1016/j.gene.2016.10.041



9.  Routh E.D.*,  Creacy S.D.*, Beerbower, P.E.µ, Akman S.A., Vaughn J.P.C, Smaldino P.J. (2017)  “ A G-quadruplex DNA affinity purification       of catalytically active G4 Resolvase1” J Vis Exp. Mar 18;(121). doi: 10.3791/55496.
     https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5409278/



2016
8.  Kharytonchyk, S., Monti, S., Smaldino, P.J., Van, V., Bolden, N.C., Brown, J.D., Russo, E., Swanson, C., Shuey, A., Telesnitsky, A.,                     Summers, M.F. (2016)  “Transcriptional start site heterogeneity modulates the structure and function of the HIV-1 genome.” Proceedings of       the National Academy of Sciences U S A. 2016 Nov 22;113(47):13378-13383. 
     https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5127319/



2015
7.  Carrick B.H. µ, Hao L., Smaldino P.J., and Engelke D.R. A novel recombinant DNA system for high efficiency affinity purification of proteins       in Saccharomyces cerevisiae (2015). Gene Genomes Genetics, 6(3):573-8.
     https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4777120/



6.  Smaldino P.J., Routh E.D., Kim J.H. µ, Giri B., Creacy S.D., Hantgan R.R., Akman S.A., Vaughn J.P. (2015)  Mutational Dissection of                 Telomeric DNA Binding Requirements of G4 Resolvase 1 Shows that G4-Structure and Certain 3’-Tail Sequences Are Sufficient for Tight         and Complete Binding. PLOS ONE. 10(7).
     https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4501837/



5.  Smaldino P.J., Read D.F. µ, Pratt-Hyatt M., Hopper A.K., Engelke D.R. (2015) The cytoplasmic and nuclear populations of the eukaryote           tRNA-isopentenyl transferase have distinct functions with implications in human cancer. Gene. 556(1):13-8. 
     https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4272631/



2013
4.  Stoler, D. L., Smaldino, P. J., Darbary, H. K., Sullivan, M. A., Popat, S. R., Hicks, W. L., Merzianu, M., Gaile, D. P., Anderson, G. R., & Loree,       T. R. (2013). Human Papillomavirus and Tobacco Use in Tongue Base Cancers. Ear, Nose & Throat Journal, 92(8), 372–380.
     https://doi.org/10.1177%2F014556131309200812



2012
3.  *Huang W., *Smaldino, P.J., *Zhang Q., Miller L.D., Cao P., Stadelman K., Wan M., Giri B., Lei M., Nagamine Y., Vaughn J.P., Akman S.A.,         Sui G. (2012) Yin Yang 1 contains G-quadruplex structures in its promoter and 5'-UTR and its expression is modulated by G4 resolvase 1.       Nucleic Acids Res. 40(3) 1033-49.
     https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3273823/



2011
2.  *Giri, B., *Smaldino, P.J., Thys, R.G., Creacy, S.D., Routh, E.D., Hantgan, R.R., Lattmann, S., Nagamine, Y., Akman, S.A., Vaughn, J.P.             (2011) G4 Resolvase 1 tightly binds and unwinds unimolecular G4-DNA. Nucleic Acids Res. 39 (16) 7161-78.
     https://doi.org/10.1093/nar/gkr234
 


2009
1.  Tezal, M., Sullivan Nasca, M., Stoler, D.L., Melendy, T., Hyland, A., Smaldino, P.J., Rigual, N.R., Loree, T.R. (2009). Chronic Periodontitis-         Human Papillomavirus Synergy in Base of Tongue Cancers. Archives of Otolaryngology and Head and Neck Surgery, 135(4), 391-6.
     https://jamanetwork.com/journals/jamaotolaryngology/fullarticle/410079